PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013589662.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 305aa    MW: 35043.4 Da    PI: 6.6703
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013589662.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.44.3e-151462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd  l+ +++++G+g +W + ++++g +R++k+c++rw++yl
   XP_013589662.1 14 KGPWSPEEDAMLKSYIEKHGTGnNWIALPHKIGIKRCGKSCRLRWLNYL 62
                     79*******************************55************97 PP

2Myb_DNA-binding38.13.7e-1269111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g++T eEd ++  +    G++ W+ Ia+ ++ gRt++++k++w++
   XP_013589662.1  69 GSFTDEEDYIICSLYITIGSR-WSIIASQLP-GRTDNDIKNYWNT 111
                      78*******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.004962IPR017930Myb domain
SMARTSM007173.6E-131364IPR001005SANT/Myb domain
SuperFamilySSF466891.3E-2613109IPR009057Homeodomain-like
PfamPF002492.3E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.0E-251569IPR009057Homeodomain-like
CDDcd001671.11E-91662No hitNo description
PROSITE profilePS5129421.11963117IPR017930Myb domain
SMARTSM007172.7E-1167115IPR001005SANT/Myb domain
PfamPF002491.2E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-2370117IPR009057Homeodomain-like
CDDcd001673.51E-770113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MGRAPCCDKT VVKKGPWSPE EDAMLKSYIE KHGTGNNWIA LPHKIGIKRC GKSCRLRWLN  60
YLRPNIKHGS FTDEEDYIIC SLYITIGSRW SIIASQLPGR TDNDIKNYWN TRLKKKLLSK  120
QGKAIHQQLS LRLEPETTSK RSSFSQNQIL MFHDENAKPP LHQTLHNQMV DPSITSFAME  180
EKRMVPVLES FSWEQNKVWL DIDHDAASSS YHHHASPHLN SMTTSSSSIC TNSPLQMSHY  240
TINDNDHGDQ EMFFMAGLEN LQDELFDEII NNNTTEFEFR GTETLNNNCL GHEINSFIDC  300
PLKDN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-25141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1891830.0AC189183.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB001A20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013722975.10.0PREDICTED: transcription factor RAX3-like
RefseqXP_013589662.10.0PREDICTED: transcription factor RAX3
SwissprotQ9M2Y91e-76RAX3_ARATH; Transcription factor RAX3
TrEMBLA0A078C2N80.0A0A078C2N8_BRANA; BnaC01g01250D protein
TrEMBLA0A0D3A1650.0A0A0D3A165_BRAOL; Uncharacterized protein
STRINGBra011785.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37780.11e-146myb domain protein 87